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    You are here: Home | Recipes | Yeasted Bread

    Homemade Whole Wheat Bagel Recipe!

    Dec 7, 2022 by Faith VanderMolen

    Jump to Recipe Print Recipe

    If you've never made bagels before, I hope this Homemade Whole Wheat Bagel Recipe gives you the confidence you need to give them a try. If I can do it, so can you!

    vegan whole wheat bagel recipe

    Have you ever made your own homemade bagels? If so, kudos to you! The thought of making homemade bagels never even crossed my mind until recently...as in a month ago.I thought the way bagels got their hard, glossy shell was from a really intensive process that normal human beings couldn't replicate. How wrong was I?! Bagels are not hard to make at all and this whole wheat bagel recipe with step-by-step instructions will help you believe that. I make these whole wheat bagels almost weekly now and we love to smear them with my homemade Nutella, classic hummus, or buffalo chickpea salad. If I can do it, you can do it!

    Jump To
    • Why You'll Love This Recipe!
    • Ingredients
    • Variations
    • How to Make Whole Wheat Bagels
    • Expert Tips
    • Best Bagel Toppings
    • Recipe FAQs
    • More Whole Wheat Bread Recipes!
    • 📖 Recipe

    Why You'll Love This Recipe!

    • Going through the steps of this whole wheat bagel recipe will make you feel like a professional bread baker. Seriously, it's so rewarding to make homemade bagels!
    • Like most bread recipes, the list of ingredients is minimal and you probably have most of the ingredients needed for these homemade bagels already.
    • The possibilities are endless when it comes to making bagels. Switch up the dough mix-ins and toppings for a new bagel flavor every week!
    • These homemade whole wheat bagels are delicious plain, toasted, smeared with your favorite spread or used as the bread for bagel sandwiches. They are so helpful to have on hand.
    • Whole wheat bagels freeze beautifully. I love to make a double batch at the start of the week and freeze them pre-sliced so we can enjoy homemade bagels for days!

    Ingredients

    • Warm Water - To know your water is at the right temperature, you should be able to place a finger into it without it being too hot. Think bath water! I usually just add some boiling water to tap water until it's warm.
    • Active Dry Yeast - I've never made this recipe with instant yeast. Active dry yeast is always my favorite yeast when making this whole wheat bagel recipe!
    • Whole Wheat Flour - Obviously, you need whole wheat flour when you're making whole wheat bagels. I personally love Bob's Red Mill's whole wheat flour, but any brand should work.
    • Maple Syrup - Maple syrup is my go-to liquid sweetener when making this whole wheat bagel recipe. If you aren't vegan, however, honey should do the trick.

    See recipe card below for a full list of ingredients and measurements.

    Variations

    • Cinnamon Raisin Bagels - Add some cinnamon and raisins to your dough.
    • Everything Bagels - Top your bagels off with onion and garlic granules and seeds after they've boiled.
    • Chocolate Chip Bagels - Add dairy-free chocolate chips to your whole wheat bagel dough!
    • Onion Bagels - Add some finely minced onion or onion granules to your dough and top them off with more onion after boiling.
    • Poppy Seed Bagels - Once your bagels have boiled, sprinkle on some poppy seeds.
    • Sesame Bagels - Top your boiled bagels with white and black sesame seeds for some crunch!
    • Rosemary Salt - Add fresh, minced rosemary to your dough and top your bagels off with flakey sea salt after boiling.
    • Blueberry Bagels - Mix dried blueberries into your bagel dough.

    How to Make Whole Wheat Bagels

    A silver stand mixer bowl filled with whole wheat flour, yeast, salt and water.

    Step 1: Pour the yeast mixture into the mixing bowl with the dry ingredients.

    A stand mixer with a shaggy ball of whole wheat dough in the bowl.

    Step 2: Mix on low until most of the loose flour has formed into a dough and it looks somewhat shredded.

    A smooth ball of whole wheat bagel dough in the bottom of a silver stand mixer bowl.

    Step 3: Mix on medium for 8-9 minutes until you get a smooth, stiff, elastic dough. Remove the dough from the mixer, form it into a ball and place it in a bowl coated with oil. Cover it with a damp towel and set it in a warm place to rise for about 20 minutes.

    Twelve pieces of whole wheat bagel dough resting on a silicone baking mat.

    Step 4: Once the dough has risen, cut it into 12 equal pieces.

    12 raw bagels resting on a silicone baking mat.

    Step 6: Pinch the center of each ball of dough to form a hole, gently stretching the hole bigger to form a ring.

    Three whole wheat bagels boiling in a large silver pot of water.

    Step 7: Boil the bagels 3-4 at a time for 30 seconds on each side. Remove them with a fine-mesh strainer and place on a wire rack to let some of the water drip off.

    A 45 degree angle of 12 bagels after they have been boiled before they baked in the oven.

    Step 8: While the bagels are still wet from boiling, press your desired topping onto the top of the bagels.

    A homemade whole wheat bagel sprinkled with salt on a silver baking sheet after it's been pulled out of the oven.

    Step 9: Bake the bagels at 425°F / 220°C for 15 minutes. Then rotate the baking sheets and bake the bagels for about 8-10 more minutes until golden brown on top. Remove the bagels from the oven and let them cool for at least 20 minutes to allow the inside to finish cooking.

    12 golden brown bagels sprinkled with salt cooking on a silicone-lined baking sheet.

    Expert Tips

    1. I used to roll small amounts of bagel dough into a snake and then try to reattach the ends to make a circle. Don't do this! Simple poke a hole in the center of a ball of dough to create the iconic bagel shape. Your bagels will hold together so much better and you won't end up with a seam.
    2. Be sure to press your bagel toppings onto the boiled bagels well. Otherwise all your toppings will fall off.

    Best Bagel Toppings

    Bagels can be enjoyed just how you would enjoy toast. The toppings and combinations are endless! I'll list out some of my favorite toppings and/or ways to enjoy bagels below:

    • Peanut butter and jelly
    • Chocolate hazelnut spread and banana
    • Hummus and beans
    • Guacamole/avocado bagel
    • Vegan egg and cheese
    • Cream cheese
    • Cinnamon Maple Dairy-Free Cream Cheese
    • Marinara sauce and cheese, melted
    • Savory Vegan Breakfast Sandwich

    Recipe FAQs

    Are whole wheat bagels really whole wheat?

    Oftentimes, store-bought whole wheat bagels also contain white flour or a combination of different flours and are completely whole grain. These homemade whole wheat bagels are made entirely from whole wheat flour!
    Yay for fiber, whole grains and protein!

    What are different homemade bagel toppings?

    One of the best part about bagels is that they can come in so many different flavors and you can create an entirely different flavor of bagel just by switching up the toppings. Some bagel topping ideas are
    1. Grated garlic and onion
    2. Sesame seeds, poppy seeds and salt (for an everything bagel)
    3. Cinnamon and sugar (for a sweet bagel)
    4. Rosemary and salt (this is our favorite combo that we get from a local farmers market)
    5. Cheese and black pepper
    6. Olives
    7. Sun-dried tomatoes and Italian herbs

    How should I store homemade whole wheat bagels?

    Fresh, homemade bagels can get stale pretty quickly. For this reason, I almost always freeze my homemade bagels. Let your homemade bagels cool, then slice them and put them in a freezer-safe zip-lock bag. That way they'll be pre-sliced when you're ready to take them out of the freezer.

    How do you reheat a frozen bagel?

    How you reheat your bagel will depend on how you stored it. If the bagel has been in the fridge, simply toast the bagel, using the bagel button if your toaster has one If you're pulling a bagel from the freezer, allow it to thaw so you can pull the halves apart. Then select the frozen setting on your toaster and toast the bagel.

    What are the best spreads for bagels?

    There are so many different spreads you can enjoy on bagels. Some of the post popular or cream cheese, flavored cream cheese, butter, peanut butter, avocado, smoked salmon and egg. You can also use bagels as the bread for your favorite sandwich!

    More Whole Wheat Bread Recipes!

    • No Knead Whole Wheat Vegan Sandwich Bread
    • Whole Wheat No-Yeast No-Rise Vegan Pizza Dough
    • Whole Wheat Vegan Cornbread (8 Ingredients!)
    • whole wheat artisan bread on a cutting board
      Easy Whole Wheat Artisan Bread Recipe

    📖 Recipe

    Homemade Whole Wheat Bagels!

    Faith VanderMolen
    If you've never made bagels before, I hope this post gives you the confidence you need to give them a go. If I can do it, you can do it!
    4.52 from 149 votes
    Print Recipe Pin Recipe
    Prep Time 1 hour hr 10 minutes mins
    Cook Time 25 minutes mins
    Total Time 1 hour hr 35 minutes mins
    Course Yeasted Bread
    Cuisine American
    Servings 12 bagels
    Calories 157 kcal

    Ingredients
     
     

    • 1 ½ cups warm water*
    • 2 ¼ teaspoons active dry yeast
    • 4 cups whole wheat flour
    • 2 tablespoons pure maple syrup
    • 2 teaspoons salt
    • 4 teaspoons sugar
    • Optional: sesame seeds, poppy seeds or sea salt for topping

    Instructions 

    • Place the warm water and yeast in a bowl and allow the yeast to dissolve completely. Set aside.
    • Combine the flour, syrup, salt and sugar in the bowl of a stand mixer fitted with the dough hook attachment. Pour in the yeast mixture, making sure all of the yeast gets into the mixing bowl.
    • Mix on low until there isn't much loose flour left and a dough looks shredded (about 2 minutes).
    • Increase the speed to medium and continue mixing until you get a smooth, stiff, elastic dough (about 8-9 minutes). If the dough starts separating into 2 sections or gets stuck on the hook, stop the machine and push the dough down to the bottom of the bowl.
      Form the dough into a ball and place it in a large bowl coated with oil. Turn the dough in the bowl so that it gets coated with oil. Cover the bowl with a damp towel and set it in a warm place for it to rise. This will take about 20 minutes. You'll know it's ready when it gets slightly larger and the dough slowly springs back when you press it with your finger. It won't double in size!
    • Preheat your oven to 425 degrees and place a rack in the middle. Fill up a large saucepan with water and bring it to a boil. Once it boils, reduce the heat to medium low so that the water is at a simmer. Cover the pot with a lid until your ready to boil the bagels.
    • Get out 3 baking sheets. Line 2 with parchment paper or a silicone baking mat for baking the bagels and place a wire cooling rack over top of the third. This rack will allow the bagels to drip off excess water after they have been boiled.
    • Turn the dough onto a dry surface and divide it evenly into 12 equal pieces, rolling each piece slightly to form a ball. Keep the dough you're not working with covered with a damp towel so that it doesn't get too dry. Pinch the center of each ball of dough to form a hole, gently stretching the hole bigger to form a ring.
    • Once you have finished forming all of your bagels you are going to boil them 3-4 at a time. Do this by placing 3-4 bagels into the simmering water and let them cook on each side for about 30 seconds. They will sink to the bottom of the pot at first and slowly begin to rise over the course of the minute. Don't forget to flip them over after 30 seconds! Remove the bagels with a fine-mesh strainer. Place the boiled bagels onto the wire drying rack and press your desire topping onto the top of the bagels while they are still wet. Continue this process until all of the bagels have been boiled and garnished with optional toppings.
    • Place the bagels onto the parchment lined baking sheets about 1 inch apart and bake for 15 minutes. Then rotate the pans and continue baking the bagels until they are golden brown on top, about 8-10 more minutes.
    • Remove the bagels from the oven and let them cool on a rack for at least 20 minutes so that the inside can finish cooking.
    • Store in a zip-lock bag for about a week or slice and freeze!*

    Notes

    *You don't want your water to be too hot to touch or else it will kill the yeast.
    *To warm up the frozen bagels, simply place them into a toaster straight out of the freezer.

    Nutrition

    Serving: 1gCalories: 157kcalCarbohydrates: 33gProtein: 6gFat: 1gSaturated Fat: 0.2gPolyunsaturated Fat: 0.5gMonounsaturated Fat: 0.2gSodium: 390mgPotassium: 174mgFiber: 5gSugar: 3gVitamin A: 4IUVitamin C: 0.01mgCalcium: 18mgIron: 1mg
    Tried this recipe?Let me know how it was!

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    Comments

    1. Lorraine says

      July 29, 2020 at 9:34 am

      Our first ever go at making bagels and very happy! Wanted a wholemeal, vegan recipe and glad we opted for this recipe. Tweaks we made: followed recipe, though only did 1tbsp of agave (rather than 2) and didn't use blender, but made like bread instead by kneading ourselves. My bagel-loving son is super happy, and will definitely be making these again!

      Reply
      • Faith VanderMolen says

        July 30, 2020 at 1:14 am

        That's so great to hear Lorraine! I'm glad the tweaks worked out for you and that you've been enjoying the final product. Thanks so much for sharing!

        Reply
      • GG says

        October 21, 2020 at 11:11 am

        Hi! Super excited to try this recipe. However, I do not have a stand mixer. How long would I need to knead the dough if I'm doing it with my hands?

        Reply
        • Faith VanderMolen says

          November 06, 2020 at 5:31 pm

          Hi! I'd say you should knead the dough for about 8-9 minutes just like if using a stand mixer. Potentially longer since a mixer is probably stronger than hand kneading. Hope they work out for you!

    2. Atara says

      July 25, 2020 at 4:57 am

      GREAT recipe made it twice this past week my boyfriend LOVED them. I made them with spelt flour and 3 tablespoons of honey (instead of the sugar and maple syrup) and they came out delicious

      Reply
      • Faith VanderMolen says

        July 30, 2020 at 1:09 am

        That's so great to hear! Sounds like your week was full of amazing, homemade bagels! Thanks so much for commenting!

        Reply
    3. Lee says

      July 11, 2020 at 9:03 pm

      These were delicious! Great texture and flavour, will definitely be making them again! I added the maple syrup to the water and yeast mixture to get a bit of extra bloom and they turned out beautifully. It was my first time making bagels, and I was a bit intimidated by the boiling before baking, but these came together really easily and the directions were really simple and easy to follow. Next time I'm going to experiment with some other flours, wish me luck! thanks for posting!

      Reply
      • Faith VanderMolen says

        July 13, 2020 at 7:54 am

        So glad you enjoyed these Lee! Thanks so much for sharing your experience! Enjoy the final result!

        Reply
    4. Lisa says

      June 04, 2020 at 7:38 pm

      I LOVE This recipe. I have used your recipe to make the whole wheat bagels which were great and I made them with Spelt flour tonight which were Awesome!! Great Recipe and I love how quick it is. Thanks for sharing!

      Reply
      • Faith VanderMolen says

        June 10, 2020 at 7:01 pm

        I'm so happy to hear you're enjoying this recipe Lisa! Thanks so much for commenting!

        Reply
      • SANDRA MORRISSEY says

        June 09, 2022 at 7:08 pm

        Did you use all spelt flour?

        Reply
        • Faith VanderMolen says

          June 26, 2022 at 9:51 pm

          All whole wheat flour!

    5. Amanda Admiraal says

      May 15, 2020 at 9:47 am

      My first time making bagels...I had them in the oven for 15 min and they turned black ?

      Reply
      • Faith VanderMolen says

        May 17, 2020 at 8:30 pm

        So sorry to hear that Amanda!

        Reply
    6. Anne says

      January 14, 2020 at 2:22 am

      Hello, just wondering - I realize yeast needs sugar to help with the rise, but would the maple syrup alone be sufficient for this? Is the 4tsp of sugar really necessary?
      Thank you!

      Reply
      • Faith VanderMolen says

        January 17, 2020 at 8:32 pm

        Hi Anne! Thanks for your comment. I believe that the maple syrup would be enough, but I haven't tried it personally for myself. If you try it out, please keep us posted!

        Reply
        • L says

          March 06, 2020 at 3:50 pm

          I tried it with just the maple syrup — it worked fine, though I’ve only tried it that way so I’m not sure how the final product differs!

        • Faith VanderMolen says

          March 06, 2020 at 5:36 pm

          Great to know! Thanks so much for sharing!

      • Barbara says

        March 16, 2020 at 10:24 am

        Did you use the 4tsp of sugar or the maple syrup with the yeast?

        Reply
        • Faith VanderMolen says

          March 17, 2020 at 1:01 am

          In this recipe I did just the water and the yeast and add both kinds of sweetener later. This is a super old recipe though and as I read back through it, I'd do a lot of things differently now that I'm a more seasoned baker/cook! I'd now probably add the maple syrup to the water and yeast mixture. This is one post/recipe I hope to retest and update soon!

        • Kristen Chen says

          April 02, 2020 at 12:40 pm

          I second that idea! =) Would love do see your updated thoughts all together.

      • Christina says

        February 23, 2022 at 4:47 pm

        Hi Anne. I just Googled this and it says that yeast does not need sugar to grow. This information was from the kingarthurbaking.com website. I don't know about you, but I try to keep the food I eat as low sugar as possible. I wouldn't add the maple syrup or honey either. I might use Monk fruit to lighten the flavor without the use of sugar. Bread of any kind should be bread.

        Reply
        • Faith VanderMolen says

          March 03, 2022 at 1:57 am

          Thanks for sharing Christina!

    7. Carol says

      December 18, 2019 at 6:51 pm

      Thank you! This recipe is very easy to follow. And fun, too! Oh let's not forget about how delicious these bagels are. Yum yum

      Reply
      • Faith VanderMolen says

        January 05, 2020 at 10:44 pm

        So glad to hear that Carol! I'm excited to make a batch this week! It's been too long and you reminded me how much I love them:)

        Reply
      • Kitchendiva says

        June 22, 2021 at 9:45 am

        I guess my oven gets too hot. They burnt. ! Next time I.will.flip them like one of the commentators said..

        Reply
        • Faith VanderMolen says

          July 13, 2021 at 9:38 am

          So sorry to hear yours burnt! I hope you're able to try again with success!

      • Lettsi says

        January 18, 2022 at 12:41 pm

        Could I replace the maple syrup for honey?

        Reply
        • Faith VanderMolen says

          January 18, 2022 at 3:49 pm

          Thanks should work! Let us know how it goes!

    8. Shayla hope says

      November 06, 2019 at 2:27 am

      So shocked, an so yummy!???? Thank you lot’s!

      Reply
      • Faith says

        November 07, 2019 at 10:08 pm

        So glad they worked out for you! Thanks for sharing Shayla!

        Reply
        • Shayla hope says

          November 10, 2019 at 1:38 am

          No problem I am so glad I found your recipe I can’t seem to keep them around for a day!???????????? the whole family loves them, absolute perfect go to recipe!

        • Faith says

          November 10, 2019 at 12:13 pm

          Such great news!

    9. Meyer says

      February 12, 2019 at 12:05 pm

      Great bagel. Rather than making strips to shape the bagel , I made then into balls and then simply molded them to have a hole in the center. As a non vegan I brushed egg yolk over both sides. I turned them over half way through the baking process.They browned beautifully. Thanks for a simple and effective recipe

      Reply
      • Faith says

        February 13, 2019 at 2:00 am

        That's definitely an easier way to make the bagel shape! I do that now, but obviously didn't know that trick when I wrote this post. Thanks for sharing! I'm so glad you enjoyed them!

        Reply
    10. Ashley Johnson says

      May 30, 2018 at 2:25 pm

      I am sooo glad I found this recipe! They turned out perfect! I tried adding a little dark Rye flour so did 1/2 c. Rye, 1/2 c. whole wheat pastry flour to make up for the denseness of the rye, and 3 c. whole wheat. Tastes like I'm at a famous bagel shop 🙂

      Reply
      • Faith says

        May 30, 2018 at 10:11 pm

        Yay! I'm so glad to hear that Ashley! And the addition of Rye flour sounds amazing. Thanks for letting me know!

        Reply
    11. Kathleen says

      February 24, 2018 at 1:55 pm

      I just finished this using my bread machine. I took the dough out before the baking started. It mixed and rose perfectly. I just shaped them into bagels, let them rest for just a few minutes before boiling then baked and .. Perfection. Thank you for a fool- proof recipe!

      Reply
      • Faith says

        February 26, 2018 at 7:51 am

        I'm so glad this recipe worked out for you Kathleen, and that you were able to use your bread maker! Thanks so much for sharing!

        Reply
    12. Tim says

      February 01, 2018 at 8:04 pm

      Looking forward to trying this out. With very little experience, this may be a foolish question but if I were to add blueberries or chocolate chips, where in the process would that happen?

      Reply
      • Faith says

        February 03, 2018 at 10:56 am

        Hi Tim! I hope the bagels work out for you. If you’re adding in blueberries or chocolate chips, I would add them in between steps 3 and 4 and have them knead into the dough. Enjoy!

        Reply
    13. Maria says

      January 14, 2018 at 7:18 am

      I added a bit of cinnamon sugar and about 1/2 cup of raisins to the last few minutes of kneading and they turned out super delicious! My family members and I raved about them. Thanks for the delicious recipe. Will be making again.

      Reply
      • Faith says

        January 14, 2018 at 6:35 pm

        Ah brilliant idea Maria! Cinnamon raisin bagels are my favorite! So glad your family enjoyed them as well. Thanks for sharing!

        Reply
    14. Cc says

      December 27, 2017 at 8:52 pm

      Is a bread mixer required? I'd like to try the recipe but i do not own one.

      Reply
      • Faith says

        December 27, 2017 at 9:32 pm

        You should be able to make them without a mixer. You can use this recipe for reference! http://www.sophisticatedgourmet.com/2009/10/new-york-style-bagel-recipe/

        Reply
    15. Anonymous says

      June 14, 2017 at 1:40 pm

      Amazing recipe. I have very little cooking/baking experience so the simplicity of this recipe is also a bonus. The bagels tasted amazing although they are a bit small so I would divide the dough into 8-10 rather than twelve. Will definitely be using this recipe again

      Reply
      • Faith says

        June 19, 2017 at 6:14 am

        I'm so glad this recipe worked out for you! You can definitely make them bigger too. I hope the bigger ones work out for you. Thanks so much for sharing your experience!

        Reply
    16. Annie says

      January 02, 2017 at 10:14 am

      Just made these here in Johannesburg, South Africa. We don't have bagel shops here, and I miss getting them back home in North Carolina. They turned out great! I like that they're smaller than store bought bagels; they make great snacking or pre-workout size! I added a bit of baking soda to the boiling water for that pretzel flavor, it helps with the chewiness as well. Thanks!

      Reply
      • Faith says

        January 02, 2017 at 10:33 pm

        That's awesome Annie! I really want to make these again soon. So glad they worked for you and thanks for sharing about the baking soda!

        Reply
    17. Cheyenne says

      August 16, 2016 at 11:52 am

      I was sceptical of this recipe because they don't have any white flour and only rise for 20 minutes but I tried it anyway because your pictures look so good. I made half plain and half dried blueberry and cinnamon. They turned out pretty well and I'm satisfied with my first try at bagels! Next time I might sub in some white bread flour because they were a touch dense for my taste though.

      Reply
      • Faith says

        August 17, 2016 at 1:15 am

        Glad you tried them out and that they worked out for you Cheyenne! Yeah, I bet those changes would make them a lot lighter. Thanks for sharing and I hope your next batch is even better!

        Reply
    18. Erin says

      October 02, 2015 at 6:55 am

      These look amazing! I'm from upstate New York and am now living in Texas and have had such a hard time finding bagels that compare to my beloved Brueggers bagels. I'm definitely going to give these a try! And thanks for the step by step photos in your recipes, I love that!

      Reply
      • Faith says

        October 02, 2015 at 8:20 am

        Thanks Erin! I lived in NYC for a year and my husband lived in Texas for 3 years so we have some connections:) I hope these work out for you! Thanks for saying hi:)

        Reply
    19. suzanne says

      August 29, 2014 at 4:47 pm

      I love homemade bagels...have been making them for awhile but always like to try a new recipe - esp as it is hard to find vegan recipes for them. Thanks for the inspiration !

      Reply
      • Faith says

        August 30, 2014 at 1:22 am

        That's amazing you've been making bagels at home for a while now! Impressive! I'm glad you found my recipe. Let me know if you try it and what you think!

        Reply
    20. Leigha @ The Yooper Girl says

      August 16, 2014 at 2:42 pm

      These look great! A few weeks ago I made homemade bagels for the first time - can't believe I waited so long! I made banana wheat bagels. They were SO good topped with sunbutter!

      Reply
      • Faith says

        August 17, 2014 at 2:08 am

        Thanks Leigha! Wow. Banana wheat bagels?!? I hope you post the recipe:)

        Reply
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